1. I’m hoping to be able to sleep soon, but currently unwell and that’s keeping me awake. I need to actually find something dull though, rather than little interesting things like this.

    Edit: f-yeahchemistry ran this a few hours after me… and it’s hit the radar as it’s awesome. However, it wasn’t viral beforehand, so I sense some foul-play… *looks around suspiciously*. 

     

    tags:  chemistry  elements  science  interesting 

    Comments
  2. Lanthanoids and Actinoids - Crash Course!

    First thing: they’re no longer the lanthanides and actinides. They were renamed by IUPAC.

    Secondly: they’re in that rather neglected bit of the periodic table, that bit under the transition metals. They are part of the “f” block, in that the outermost electrons naturally reside in the f orbitals. Well known examples are Uranium and Plutonium. If you want some info about orbital theory and how chemists use them, this link is good.

    We have much larger coordination numbers and much more fun, the 18 electron rule (an expansion of the octet rule) does not apply.

    The chemistry of both is different because the 4f orbital behaves differently from the 5f orbital, so some subheadings for each are below:

    Lanthanoids.

    We call these the rare earth elements (along with scandium and yttrium of the actinoids) because we can find them in the earth. But they’re not actually *that* rare: quite a few have an abundance greater than gold and some greater than lead, for example. Cerium is the most abundant. You’ll find most of the world’s supply of rare earth metals in China and the US. They all occur naturally apart from Pm. From bastnäsite you can get the lighter lanthanoids, and you can get all of the metals (excluding Pm) from monazite. We can obtain 147Pm as a product of fission, including from nuclear reactors.

    We use them daily in:

    •  catalytic converters (Cerium oxides)
    •  lasers (Neodymium)
    •  speakers (ta Rolphus! - Neodymium)

    They’re pale and *glow* brightly under UV light, which is fun. They’re also paramagnetic.

    It’s probably best to think them as “soft” s-block metals (Group 1 and 2) rather than transition metals. Because:

    • Metal-ligand bonds aren’t really important compared to transition metal chemistry.
    • The 4f-orbitals are deeply buried away (at least compared to the 5f orbitals)
    • There’s also little preference in bond direction like the s-block.
    • There’s also not much difference between members of the lathanoids compared to transition metals as well.
    • The splitting of the degenerate set of f orbitals in crystal fields is tiny, so crystal field stabilisation effects don’t really matter like they do in transition metal chemistry.

    So due to the above (but changing a +1 or +2 oxidation state to +3), we can assume…

    • When the Lanthanides are exposed to air, they tarnish from their original silvery-white, forming their oxides - this is more pronounced as you go along the period.
    • They are somewhat soft metals.
    • They burn easily in air.
    • They’re strong reducing agents
    • Their boiling points and melting points are high
    • All the Lanthanides are highly reactive.
    • They react with Hydrogen in an exothermic reaction
    • They react easily with most non-metals
    • Preferences in coordination numbers and geometries tend to be controlled by steric effects (VSEPR)

    The sorts of species lanthanoids like (hard to soft) are F-, OH-, H2O, NO3- and Cl-. Lanthanoid 3+ ions are “hard” themselves and thus prefer hard species to bond with over soft ones.

    The ionic radii of the lananoids *decrease* as you go from left to right across the group, which is called the lathanoid contraction. This is because there is imperfect shielding of one electron by the others in the same sub-shell. Eu and Tb have slightly bigger radii as atoms, and Lanthanoids have smaller radii than Actinoids. Size is the most important factor in determining stability constants and coordination numbers of coordination complexes.

    Lanthanoid and Halides

    • Predictable. Ln + F2 —> LnF3.
    • Can also get LnX4 from Ce, Pr and Tb.
    • TbCl3 to LuCl3 are 6 co-ordinate, LaCl3 to GdCl3 are 9 co-ordinate

    Lanthanoid and Hydroxides/oxides

    • LnOH - strong base. strength of base + solubility goes down as you go across the series.
    • Ln2O3 formed by thermal decomposition of oxoacid salts, but Ce, Pr and Tb give higher oxides and need H2 to reduce to Ln2O3.

    Complexes of Ln(III)

    Ln3+ ions are hard. Ln3+ in water tends to be 9 co-ordinate. (tricapped trigonal prismatic)

    Spectroscopic stuff (if you don’t know about this area, don’t worry for now)

    Spin orbit coupling is more important than crystal field splitting.

    S,P,D,F,G terms are possible, with different values of J, so the number of possible transitions is *large*, so large number of possible absorptions.

    Absorptions due to f-f transitions are sharp. Absorptions due to 4f-5d transitions are broad. Why?

    • The 4f orbitals are well shielded from any ligand effects as they are so contracted, and therefore the f-f transitions are as sharp as they would be in atomic spectra.
    • In contrast the d-d transitions in transition metal ions are typically broadened by interaction with ligands.

    Actinoids tomorrow!

     

    tags:  chemistry  inorganic  lanthanoids  revision  science 

    Comments
  3. What is the best format for a university project/dissertation in Chemistry – progress so far

    TL;DR version: Plain text is fun, yo.

    I’ve settled on a modified form of Markdown, with a few additions for comments and notes. I feel this provides a good compromise between TeX and Word for OS X, with more complex equations added in using TeX later (there’s a nice GUI client knocking about for this), to be inserted in the same manner as the diagrams/illustrations. 

    Good bits so far:

    • It’s *fast*. Pages/Word often pinwheels on this machine. TextWrangler can handle huge amounts of text, way beyond what I’ll need for this.
    • I don’t have to learn anything new for now: with deadlines looming scarily close, this is important. I find markdown very easy to just chuck out.
    • It encourages good behaviour: whenever possible, I’m sticking to unicode characters.
    • Because I can access several documents easily using the sidebar I’m quickly adding in references as I type, which makes the bibliography task a lot easier. As I’m handling less than 150 references, they have personal nicknames/IDs so I just refer to [n] and the second document has the nickname (which is also the name of the file).
    • I can’t spend my time fiddling on the subheading fonts to distract myself from work - separating content from layout is great for this reason.
    • I also find it much easier to see if I’m being an idiot in a monospaced font… blame irc for this.
    • Teeny tiny files! Plus plain text can pretty much be opened everywhere, so along with backups there’s as small a chance of data loss as I can make. It can be easily uploaded to my server, or MobileMe if difficult situations occur.

    Bad bits:

    The references solution is not easily scalable. At the moment I’m relying on a large Notebook.app document (Circus Ponies software) where I’ve logged about 85% of the PDF references I’ve used (and the book ones too, which is pretty much why this document exists), along with summaries, citation in RSC style and the nickname I’ve given to the file (along with a link to re-download the article if required). To scale beyond the number of documents I have I’d require a better solution. For now, this is the compromise I’ve agreed on.

    Ugly bits:

    I’m considering creating a modified form of markdown for science/academic writers if I ever get this work done. The beauty of markdown is in its simplicity, so there will only be a few changes, if that (mainly extending the footnote feature, and including an official citation feature). Yes, this is ugly. You don’t want me touching code. Watching me code is like watching a kitten drive a car: it’s very cute to see my paws on the wheel and I look so happy in control of the car, but the owner of the house nearby wont be pleased when I arrive in their conservatory by driving into the side of it and then declaring “O HAI I HAZ WHEELS, PROPR DRIVER ME” in white Impact.

    There should be a conclusion to this once I’ve submitted the project writeup, and probably amended again once I have my results. Until then: less Tumblr, more work. I’ve been good today, let it continue!

     

    tags:  chemistry  my life  productivity  endnote  citations  dissertation  OS X  markdown 

    Comments
  4. scienceislove:

freshphotons:

Artistic rendition of the multifractal patterns observed in the electron probability density of a disordered material. The pattern is from scanning tunneling microscopy (STM) of the ferromagnetic semiconductor Ga1-xMnxAs close to the critical point where the material undergoes the transition from a metal to an insulator. Known as a Mott-Anderson transition, this material exhibits strong electron-electron correlations that appear vital to the formation of these patterns. Via.

    scienceislove:

    freshphotons:

    Artistic rendition of the multifractal patterns observed in the electron probability density of a disordered material. The pattern is from scanning tunneling microscopy (STM) of the ferromagnetic semiconductor Ga1-xMnxAs close to the critical point where the material undergoes the transition from a metal to an insulator. Known as a Mott-Anderson transition, this material exhibits strong electron-electron correlations that appear vital to the formation of these patterns. Via.

     

    tags:  science  pretty  reblog  semiconductors  chemistry 

    Comments
  5. fuckyeahmath:

proofmathisbeautiful:

scienceisbeauty:

Low-2θ detection limit of the CheMin III prototype: XRD pattern of non-purified silver behenate CH3(CH2)20COO-Ag with the first ring at d001=58.38Å, 1.75° 2θ Co Kα
Source: Indiana University Department of Geological Sciences  



For casual readers, XRD stands for X-ray diffraction. It has a wikipedia article here.
http://en.wikipedia.org/wiki/Powder_diffraction
Although I’d argue it’s not great for beginners. :-(

    fuckyeahmath:

    proofmathisbeautiful:

    scienceisbeauty:

    Low-2θ detection limit of the CheMin III prototype: XRD pattern of non-purified silver behenate CH3(CH2)20COO-Ag with the first ring at d001=58.38Å, 1.75° 2θ Co Kα

    Source: Indiana University Department of Geological Sciences

    For casual readers, XRD stands for X-ray diffraction. It has a wikipedia article here.

    http://en.wikipedia.org/wiki/Powder_diffraction

    Although I’d argue it’s not great for beginners. :-(

     

    tags:  XRD  chemistry  pretty  science 

    Comments
  6. scienceislove:

freshphotons:

An optical micrograph of a hybrid organic/inorganic polymer film that exhibits both nanoscale and microscale structures due to a competition between self-assembly and crystallization. These materials provide fundamental insights into polymer science and have potential application in nanoscale pattern transfer processes.Previously published as cover image in Soft Matter, DOI: 10.1039/b902114k (2009). Via.

    scienceislove:

    freshphotons:

    An optical micrograph of a hybrid organic/inorganic polymer film that exhibits both nanoscale and microscale structures due to a competition between self-assembly and crystallization. These materials provide fundamental insights into polymer science and have potential application in nanoscale pattern transfer processes.

    Previously published as cover image in Soft Matter, DOI: 10.1039/b902114k (2009). Via.

     

    tags:  chemistry  pretty  soft matter  science 

    Comments
  7. macmankev:

    livfm:

    It sounded interesting enough, and it was although I don’t know why freezing water using heat would be helpful because the techniques they described sounded more complex than just buying a giant freezer. Anyway it just annoyed me because it seemed blatantly obvious nobody had read this article, and those who had wouldn’t have liked/reblogged it because it was just a bunch of chemistry with two interesting sentences. What I’m saying is that I want that fruit person again but made of a mandarin and not a banana.

    It’s interesting science, but I think you’re right, no one actually read the article. I think many people were even thinking about heat as temperatures above freezing when in fact it’s just supercooled water being heated up. The water itself still has a temperature below the freezing point. The part I actually find more interesting is how the charge effects the way the water freezes.

    And I agree, we need more fruit people.

    This reminds me of this particular encounter from a few months ago.

    Me: “I learnt about high temperature superconductors today! It’s really cool.”

    Rolphus: “Wow, how warm? and how do they make them?”

    Me: “Well, they can get up to 120 Kelvin! Isn’t that fantastic?”

    Rolphus: “Er…”

     

    tags:  chemistry  rolphus  silly  science  interesting 

    Comments
  8. freshphotons:

This is an optical microscope image of a liquid crystal (Cromlyn in water). The colors are created by molecular variations or changes in the crystal’s thickness. Via.

    freshphotons:

    This is an optical microscope image of a liquid crystal (Cromlyn in water). The colors are created by molecular variations or changes in the crystal’s thickness. Via.

     

    tags:  science  pretty  liquid crystals  chemistry 

    Comments
  9. freshphotons:

Polarization-microscope image of liquid crystal. Via.

    freshphotons:

    Polarization-microscope image of liquid crystal. Via.

     

    tags:  science  pretty  chemistry  liquid crystals 

    Comments
  10. freshphotons:

If you could climb the twisted ladder of a DNA molecule and look down, you might see something like the image above. Kenneth Eward, a science artist at BioGrafx Scientific & Medical Images in Ovid, Michigan, used x-ray crystallographic data from DNA molecules to paint a unique portrait of the double helix. The image omits the chemical bonds that crisscross the center of the molecule, so that the structural features of the helix can be seen more easily. Via.

    freshphotons:

    If you could climb the twisted ladder of a DNA molecule and look down, you might see something like the image above. Kenneth Eward, a science artist at BioGrafx Scientific & Medical Images in Ovid, Michigan, used x-ray crystallographic data from DNA molecules to paint a unique portrait of the double helix. The image omits the chemical bonds that crisscross the center of the molecule, so that the structural features of the helix can be seen more easily. Via.

     

    tags:  science  pretty  structures  chemistry  DNA  crystallography 

    Comments
  11. scienceisbeauty:

Nanoparticle
Source: National University of Singapore, Nanosicence & Nanosystems Laboratory, Dr. Ho Ghim Wei
     

    tags:  awesome  science  chemistry 

    Comments
  12. cheeryowls:

ellekael:

cheeryowls:

fuckyeahchemistry:

Lamp powered by human blood
LiveScience:

A lamp that uses blood to create light is meant to make people rethink how they use energy. 
The lamp contains luminol, a chemical that reacts with the iron in blood and creates a bright blue glow.



This would make something useful out of the time of the month I suppose.

hahah i never thought of it that way, yes it very well could be !

    cheeryowls:

    ellekael:

    cheeryowls:

    fuckyeahchemistry:

    Lamp powered by human blood

    LiveScience:

    A lamp that uses blood to create light is meant to make people rethink how they use energy.

    The lamp contains luminol, a chemical that reacts with the iron in blood and creates a bright blue glow.

    This would make something useful out of the time of the month I suppose.

    hahah i never thought of it that way, yes it very well could be !

     

    tags:  awesome  chemistry  pretty  science 

    Comments
  13. fuckyeahchemistry:

Win!
Via

Yay, BaCoN!

    fuckyeahchemistry:

    Win!

    Via

    Yay, BaCoN!

     

    tags:  chemistry  mmm bacon  silly  t-shirt  science 

    Comments
  14. scienceisbeauty:

Heavy metal ions such as those of arsenic, silver, mercury, and copper exhibit oligodynamic activity, binding to the sulfur atoms in the amino acid cysteine, causing the protein to denature or change its shape and block the active site.
Source: Prince George’s Community College, link

    scienceisbeauty:

    Heavy metal ions such as those of arsenic, silver, mercury, and copper exhibit oligodynamic activity, binding to the sulfur atoms in the amino acid cysteine, causing the protein to denature or change its shape and block the active site.

    Source: Prince George’s Community College, link

     

    tags:  DNA  awesome  chemistry  science 

    Comments
  15. givemesomethingtoread:

    The little-told story of how the U.S. government poisoned alcohol during Prohibition with deadly consequences.

    1. This mentions Paraquat. Yay

    2. It reminds me of this, http://www.guardian.co.uk/education/2001/aug/25/research.highereducation/print but the latter was more opportunist than the alcohol scheme.

     

    tags:  USA  chemistry  government  nanny state  science  history 

    Comments

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